PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY47317.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 343aa    MW: 38135.7 Da    PI: 5.1771
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY47317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.4e-151457146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g W++eEde+l+++++++G g+W+++++  g  Rt++++k++w++
       GAY47317.1 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAG--RTDNEIKNFWNS 57
                     678****************************8..**********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MGRHSCCVKQ KLRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGRTDNE IKNFWNSCLK  60
KKLMKQGIDP ATHKPIADII EIEVKEEKDR NTPSSACTDK AYLQMPHSKG PLPSSSTSNV  120
STFTAQEPIF LANDHSSSYY RNGLPDDSKD QFWNNQHPYD PFSSFEFQAG GVDHQSGYDN  180
SNLLSQYQPH ENQFDTSSNF TFSSIAPGLT ASFDHHGNVS GMADFSDASG SGSRVSSFFL  240
NEAKESSSNS SNMSNYSGFQ INNLVENASA SASAFSWDSE NKLNSMFHQF QVNGIIKSEE  300
IITPSPWQEG QLHTPSSVDF SSYPLTSLSE DLTAANFDIF NHI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-35MYB family protein