PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47474.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 223aa MW: 24665.5 Da PI: 8.4165

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.9	1e-44	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeAe+r+rdPvyG+vgvi+ lq++l+ql+ +l+ +k+ GAY47474.1 11 PCAACKLLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELQPSQREDAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKS 109 7**********************************************************************************************9998 PP DUF260 100 e 100 e GAY47474.1 110 E 110 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MASSSSNSNS PCAACKLLRR KCQPECVFAP YFPPDQPQKF ANVHKVFGAS NVTKLLNELQ 60 PSQREDAVNS LAYEAEMRLR DPVYGCVGVI SFLQHRLRQL QMDLSCAKSE LSKYQNLGHA 120 GLIAAAHHHH HHQNMGMNLI GGAGGGGRDH HFHHHFFPRD HHPNNNHNHN QHHQMIRGFD 180 AAAAANGNNY DATLLASGIG QFTQFQQPRA AAGDDRRSTI DPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	2e-77	LBD family protein