PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY47526.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 246aa    MW: 26903.4 Da    PI: 8.8108
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY47526.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.42.7e-294107199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C++lr++C++dC++ p++      ++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ dP++G+vg++++++++ +q+++++
  GAY47526.1   4 SCNGCRILRKGCSDDCIIKPCLdwiksSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDA 102
                 6*********************9998667889****************************************************************999 PP

      DUF260  95 allke 99 
                 +l ++
  GAY47526.1 103 VLKGK 107
                 88765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MRMSCNGCRI LRKGCSDDCI IKPCLDWIKS SDAQANATLF LAKFYGRAGL INLIEAGPQH  60
LRPAIFKSLL YEACGRIVDP ISGSVGLLWS GKWEQCQAAV DAVLKGKTIT QNPSSSSSSS  120
SSNNNAPAAA PWTLNVQSPP PKIYDIRHVS KDPSAANCSD KTKARAKRSW NRRPKAPVVG  180
RESIQDQSSW LQSQVISRSE DDYESIFSVE TVEGSLDVNR NKQRWVQNGS GDVGLELTLC  240
LPPTNH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-73LBD family protein