PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY47552.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 316aa    MW: 36153.3 Da    PI: 5.6762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY47552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.83e-192875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll ++++q+G g+W+ +a++ g++Rt+k+c++rw++yl
       GAY47552.1 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 75
                     89********************************************97 PP
2Myb_DNA-binding49.97.3e-1681124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
       GAY47552.1  81 RGNLTPQEQFLILELHSKWGNR-WSKIAQCLP-GRTDNEIKNYWRT 124
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MHTMRAARAA GTKRECNSSE EDQQELRRGP WTLEEDTLLT HYIHQHGEGR WNMVAKCAGL  60
KRTGKSCRLR WLNYLKPDIK RGNLTPQEQF LILELHSKWG NRWSKIAQCL PGRTDNEIKN  120
YWRTRVQKQA RQLNIESNSE TFFEAVRCYW MPRLLQKMEQ NSASPNTLLT NSSAQSSNFS  180
IIPSVSSSTL SPLPSTILYN SNQTINENSS SETSPNFFPG DFSKISQLQQ PGITQQPTSP  240
HAYGNNVCSN QIVPNDSYYV DCCGFDMEGY SLTDPIAEMS SYDISSSECQ MAEADWMSND  300
MSDALWNMDD IWQLRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-92MYB family protein