PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47634.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 341aa MW: 37938.6 Da PI: 7.1375

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47634.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.5	6e-15	259	284	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaHg GAY47634.1 259 FKTELCNKWQETGACPYGDHCQFAHG 284 79***********************8 PP
2	zf-CCCH	18.5	3.5e-06	297	321	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H GAY47634.1 297 YKTEVCRMVLAGDVCPYGHRCHFRH 321 9********55********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MFLTTGLGYC CSDADEQMQN DGVSANPYSN HGVASSKSQD DENADAFASL YSSLVMAQPE 60 TTLSHNPYND PTIHDSLYYS RLLIRQQQQQ QHQDMINRHN LCLTRLREAA REAEALRQEN 120 DSLRTVNREL NKHVSLLIKS SVNEQLSCGN NDAATSFGVV NGMRGLSIAG GGEEVSAESP 180 TSVMENVDVK RVSLPKSISV RSNGYLKMGQ PAAAAAAAAT SKTRPRTPAP LRPTQKVYVK 240 GGKQEEEPLE LEVYNQGMFK TELCNKWQET GACPYGDHCQ FAHGIEELRP VIRHPRYKTE 300 VCRMVLAGDV CPYGHRCHFR HALTEQERFM GHLNPRSIKL N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	8e-70	C3H family protein