PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY47929.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 747aa    MW: 84939.6 Da    PI: 6.4031
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY47929.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS395.94.2e-1213747451374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+av+++d + a+++L+++++++sp gd +qRla++f+ +L+arla+++s++yk +  ++ts    ++ l+a++l+  ++P+ k+s++taN
  GAY47929.1 374 LRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAGTGSQIYKGFVNKRTS---AADILKAYQLYLAACPFRKLSNFTAN 469
                 689*************************************************************999998...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I+  ++++ r+HiiDf+i +G+QWp+++q ++ Rp+gpp+lRiTg++ p++g   +e++eetg+rLa++A+ ++vpfe+n+ +akr+++++leeL++
  GAY47929.1 470 KTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGfrPAERVEETGRRLADYAKDFNVPFEYNA-IAKRWDTIQLEELKI 567
                 *****************************************************9*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E+l+Vn+ ++ ++llde+ +++s r+ +L+++++++P+++++   +  +n++ F++rf eal ++sa+fd+le+ +pre++er+++E+ ++gre+ 
  GAY47929.1 568 DRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREAL 666
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nvvaceg er+er et+++W+ r  +aGF ++pl+ +++k+a   +r  + + + ++e++ +l++gWk+r ++++SaW+
  GAY47929.1 667 NVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKKATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWK 745
                 ************************************************99888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    
MDPRLRGFPG SGNGIQLSNQ PVSVFPNQNL VAGRFENIFL DQRFRDCRYR QPDPTPINVV  60
SSSTVNHEED SPEDCDFSDA VLRYINQMLM EEDIEEKNCM LQESLDLQAA EKSFYDVLGK  120
KYPPSPDHSL TYFHQNGESP DGDTSRNLHG YIYGGSDVSS YLIDNNFIQN SGEYFNSQLQ  180
SLPLSTMPQS SYSSSNSVIT SVDGLVDSPS SSLQLPDWNN ESQSIWQFRK GVEEANKFLP  240
SENELFVNLE ANRLSSWVPK GETNEVAVKE EKEEVEDVSS NGSRGRKNPY REDVDLEEER  300
SSKQAAIYSE SPLRTEMFDM VLLCSGGQSP TVALREALKN ASSKTVQQKG QSKGSNGAKG  360
RGKKQSGKKE VVDLRSLLIH CAQAVAADDR RSAHEFLKQI RQHSSPFGDG NQRLAKCFAD  420
GLEARLAGTG SQIYKGFVNK RTSAADILKA YQLYLAACPF RKLSNFTANK TIMSLAQNSM  480
RLHIIDFGIL YGFQWPTFIQ RISMRPGGPP KLRITGIEFP QPGFRPAERV EETGRRLADY  540
AKDFNVPFEY NAIAKRWDTI QLEELKIDRD EVLVVNCLYR AKNLLDETIA VDSSRNIFLN  600
FIRKINPHMF IHGITNGAYN APFFVTRFRE ALFHFSAMFD MLETIVPRED RERMVIEKDI  660
FGREALNVVA CEGWERVERP ETYKQWQVRN LRAGFVQLPL DRDIVKKATD RVRSGYHKDF  720
VIDEDNRWLL QGWKGRIIYA LSAWKPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein