PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY47964.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 187aa    MW: 20088.7 Da    PI: 8.9438
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY47964.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.55.8e-302103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ C+l+ ++     p++q +++ +++k+FG+s +l++++a+p+++r+++++sl++eA+ r+ +Pv Gavg++++++++++++++e+
  GAY47964.1   2 SCNGCRVLRKGCSETCILRSCLqwidtPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVET 100
                 6***********************************************************************************************998 PP

      DUF260  95 all 97 
                 +l 
  GAY47964.1 101 VLS 103
                 875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MSCNGCRVLR KGCSETCILR SCLQWIDTPE AQGNATLFLA KFFGRSDLLS FIAAVPQHQR  60
PALFQSLLFE ACGRTVNPVD GAVGLLSSGN WHVCRAAVET VLSGGTLIRP TAPAATTTRT  120
GPKPNNFDKD EGSPPAQSNP SSDGVMTGKR GRGRSPAMSF YSDTTDFQSS KRGGDHHQDK  180
KLLNLFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.16e-61LBD family protein