PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48047.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 260aa MW: 29072.8 Da PI: 8.5668

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	101	155	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q +Le+ F++++++s ++++ LA+kl+L rqV vWFqNrRa+ k GAY48047.1 101 RKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 788899***********************************************98 PP
2	HD-ZIP_I/II	117.7	6.5e-38	101	189	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k q ++LE++F+e+++L+p++K+ la++L+l+prqv+vWFqnrRAR k+kq+E+++e Lkr++++lk+en+rL++ev+eL++ GAY48047.1 101 RKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEVECELLKRCCEKLKDENKRLQREVQELKS 189 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MEFDDSTCLG LGIQGALPQS DDHDHQKKNG KKLILKDDQL LPSLTLGRRS ENTLKSATKE 60 KESTDVLQQA SCMSMSMSAL SSISNSKGIR DHHEDEGGSP RKKLRLTKPQ FATLEDTFKE 120 HSTLSPKQKQ GLAEKLNLRP RQVEVWFQNR RARSKLKQTE VECELLKRCC EKLKDENKRL 180 QREVQELKSM KLSGAPLYMK LPAPTLTVCP SCDEKLDGGD GRDVYGDGYG DGDGSSTSRS 240 SFTFGSKHLY NSFTHPSAFC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	158	RRARSKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	7e-60	HD-ZIP family protein