PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48145.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GATA

Protein Properties

Length: 626aa MW: 67609.1 Da PI: 5.6508

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48145.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.5e-16	289	324	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ kg GAY48145.1 289 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKG 324 ***99999*********************998 PP
2	GATA	48.7	1e-15	478	514	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ GAY48145.1 478 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 514 *****99***********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence
MPTQTGPANL QTSTADTSLP SLRQQPRPAA AVLTALPTLC EPPSISSSHL PPPCLQPSTT 60 IIATVSIVRH LVSGRPLRDG NSPSQIHSHE GFTQNLQKVF PFGNASKSPS FGPISPMYGQ 120 SQSMNISSQM SGGGAAADED DVSVAADDHH LSYDPHSALE NGIVVVEDVA HDSGYATGGN 180 ELSNSSQLTL SFRGQVYVFD SVTPDKGIAD YPAKCTQPQR AASLDRFRQK RKERCFDKKV 240 RYSVRQEVAL RMQRNKGQFT SAKKCEGGAL GWSNAQDPGQ DDSPSETSCT HCGISSKSTP 300 MMRRGPSGPR SLCNACGLFW ANKGALRDLG KKMEDQPLTP AEQGEGEVND SDCGTAAHTD 360 NELVQAVLLL LGGRDIPTGV PTIEVPYDQS NRGVVDTPKR SNLSRRIASL VRFREKRKER 420 CFDKKIRYSV RKEVAQRMHR KNGQFASLKE SSGASPWDSS QDGIQDGTPR PETVVRRCQH 480 CGVSENNTPA MRRGPAGPRT LCNACGLMWA NKGTLRDLSK GGRSLSMDQL EPETPMDVKP 540 SIMEGEFSGN QDELGTPEDP AKAVNQGSDN PSIDPDEEDM HGAAEDLTNS LPMGLVHSSA 600 DDDEQEPLVE LANPSDTDID IPSNFD

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence

MPTQTGPANL QTSTADTSLP SLRQQPRPAA AVLTALPTLC EPPSISSSHL PPPCLQPSTT  60
IIATVSIVRH LVSGRPLRDG NSPSQIHSHE GFTQNLQKVF PFGNASKSPS FGPISPMYGQ  120
SQSMNISSQM SGGGAAADED DVSVAADDHH LSYDPHSALE NGIVVVEDVA HDSGYATGGN  180
ELSNSSQLTL SFRGQVYVFD SVTPDKGIAD YPAKCTQPQR AASLDRFRQK RKERCFDKKV  240
RYSVRQEVAL RMQRNKGQFT SAKKCEGGAL GWSNAQDPGQ DDSPSETSCT HCGISSKSTP  300
MMRRGPSGPR SLCNACGLFW ANKGALRDLG KKMEDQPLTP AEQGEGEVND SDCGTAAHTD  360
NELVQAVLLL LGGRDIPTGV PTIEVPYDQS NRGVVDTPKR SNLSRRIASL VRFREKRKER  420
CFDKKIRYSV RKEVAQRMHR KNGQFASLKE SSGASPWDSS QDGIQDGTPR PETVVRRCQH  480
CGVSENNTPA MRRGPAGPRT LCNACGLMWA NKGTLRDLSK GGRSLSMDQL EPETPMDVKP  540
SIMEGEFSGN QDELGTPEDP AKAVNQGSDN PSIDPDEEDM HGAAEDLTNS LPMGLVHSSA  600
DDDEQEPLVE LANPSDTDID IPSNFD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	396	401	DTPKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.3	7e-65	GATA family protein