PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY48345.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92877.2 Da    PI: 6.5901
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY48345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-192684357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  GAY48345.1 26 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 84
                5679*****************************************************97 PP
2START178.73.3e-561753892205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHH.....HHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlal.....lveellddkeqWdetlakaetlevissg..galql 93 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++++     +v+e+l+d++ W ++++++e+++v+ +g  g+++l
  GAY48345.1 175 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRvsrpaVVAEILKDRPSWYRDCRSVEVVNVLPTGssGTIEL 273
                 789**************************************************9987542222289********************************* PP

                 EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHH CS
       START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksg 188
                  +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+
  GAY48345.1 274 LYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmpqAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESS 372
                 *********************************************99999************************************************* PP

                 HHHHHHHHHHHTXXXXX CS
       START 189 laegaktwvatlqrqce 205
                 +  ++kt++a+l+++++
  GAY48345.1 373 TLIAQKTTMAALRHLRQ 389
                 ************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MMAVSSGGSR DSRDSGGQKM IMDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC  60
PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV  120
YENTFFRQQT QNAATLATTD TSCESVVTSG QHHLTPQQQH QHPPRDASPA GLLSIAEETL  180
TEFLSKATGT AVEWVQMPGM KPGPDSIGIV AISHGCTGVA ARACGLVGLD PTRVSRPAVV  240
AEILKDRPSW YRDCRSVEVV NVLPTGSSGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE  300
DGSLVVCERS LNNTQNGPSM PQAPHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS  360
VPEVLRPLYE SSTLIAQKTT MAALRHLRQI SQEVSQPSVT GWGRRPAALR ALSQRLSRGF  420
NEALNGFTDE GWSMLESDGI DDVTVHVNSS PSKMMGVQLS YVNGFPSMSN AVLCAKASML  480
LQDVPPAILL RFLREHRSEW ADSSIDAYSA AAVKAGPCSL PVPRAGNFGG QFLEVIKLEN  540
MAHYREDMIM QSDIFLLQLC SGVDENAVGN CAELVFAPID ASFSDDAPII PSGFRIIPLD  600
SGKDTPSPNR TLDLASALEV GPTGNKASGD SSTQCGSTKS VITIAFQFAF EMHLQENVAS  660
MARQYVRGII ASVQRVALAL SPSRFGSNAG LRPPPGSPEA HTLARWICQS YRCYLGAELL  720
KCEGNESILK TLWHHSDAVL CCSLKALPVF TFANQAGLDM LETTLVALQD ITLEKIFDDS  780
GRKTLCSEFP QIMQQGFMCL QSGICLSSMG RPISYERAVA WKVLNEEENA HCICFMFINW  840
SFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0HD-ZIP family protein