PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48379.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 248aa MW: 28635.1 Da PI: 6.9288

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48379.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.2	8e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + G ++W+ +++ g+ R++k+c++rw +yl GAY48379.1 14 RGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	26.2	1.8e-08	69	91	23	46
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 W++Ia++++ gRt++++k+ w++ GAY48379.1 69 AWSKIAAHLP-GRTDNEIKNQWNT 91 4*******.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MGRQPCCDKV GLKRGPWTIE EDHKLMSFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGAW SKIAAHLPGR TDNEIKNQWN TRIKKRLKLL GLDPVTHKPI NGNHEEQVVT 120 VDKKTDDQHE IKHSKLNVTS SSTEQEIDDN VMEEIRRTDD DDVKTQQVLN IDYQVLWGNN 180 LNNVVASGSC SASSFSWEKS NNYNPSSVLS NDQSNSFQQW IDNVNVDSLL SWDYCFNQQE 240 DNLFLHLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	6e-70	MYB family protein