PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48417.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 367aa MW: 41193.7 Da PI: 6.3601

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48417.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	6e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++++++G+g +W + ++++g++R++k+c++rw++yl GAY48417.1 14 KGPWSPEEDAKLKEYIEKYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.4	5.8e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ GAY48417.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RKQSNNINGL ISTSGQDVNG VNNGGDENNN SQYSQGLSNS AIERLQLHMQ LQSLQNPLSF 180 YNNPSFWPKL HPVQEKMIQN LQSLNQSCQN PNLQNVLPSS QLGLHEQNVG NFFEQSNSPP 240 SAPQDFPQST CPVPVSNTDN NVMNSNAMLK ANGFEPYNAA NQEVSTFQAE IENFLNNNKA 300 VGFTAQEENQ IAQFDCFNVL NGSNKESLIW WANEFDSKSA SSNSWDSTPA IHQSEGMFQD 360 YELGYNI

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
RKQSNNINGL ISTSGQDVNG VNNGGDENNN SQYSQGLSNS AIERLQLHMQ LQSLQNPLSF  180
YNNPSFWPKL HPVQEKMIQN LQSLNQSCQN PNLQNVLPSS QLGLHEQNVG NFFEQSNSPP  240
SAPQDFPQST CPVPVSNTDN NVMNSNAMLK ANGFEPYNAA NQEVSTFQAE IENFLNNNKA  300
VGFTAQEENQ IAQFDCFNVL NGSNKESLIW WANEFDSKSA SSNSWDSTPA IHQSEGMFQD  360
YELGYNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-96	MYB family protein