PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48703.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 211aa MW: 22719.1 Da PI: 7.7883

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48703.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.8	2.3e-30	12	112	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l++ + p++q++++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA r+ +Pv+Gavg++++++++++q+++e GAY48703.1 12 SCNGCRVLRKGCSENCMLRQSIqwigtPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVER 110 6***********************************************************************************************998 PP DUF260 95 al 96 +l GAY48703.1 111 VL 112 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MTCAGRKKIN MSCNGCRVLR KGCSENCMLR QSIQWIGTPQ AQANATVFVA KFFGRAGLMS 60 FISAVPETQR PSLFQSLLYE AVGRTVNPVS GAVGLLWTGN WNVCQSAVER VLCGGALQPL 120 PCPLAPELDD VSESAVNCTN NSPKDVITPP SKRKAVSDFH DDLHLGLKPC LPEKLRAETP 180 SEESETTTSG TGSDNCCSEV AGEKKLLRLF L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	8e-64	LBD family protein