PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY48797.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 237aa    MW: 27061.6 Da    PI: 5.7311
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY48797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.64.4e-203579246
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                + e+k   qvtfskRr g++ KA EL+vLC+aev +i+fs++gk+
  GAY48797.1 35 KLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKI 79
                56899999***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MNNNINISNN NNGNNIDPSS KKKITRGRQK IQIKKLEDKN SLQVTFSKRR SGLFSKAMEL  60
CVLCGAEVGI IVFSPNGKIF LAGHPDFDKI LNRYLDQNHS SLDEVNTIPC VQQHNKEYED  120
AMQELEKEKK RGKMIEEEKK KNKSNGRFWW QEDNIIDDMG IEELEEYLKA MKKLKGKVEM  180
RVNEIMMNGY LAPNMNLGND HPDAFGNINV NVNEDISVSG GIDGGVDFDF GFDEHFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-35M-type_MADS family protein