PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY48978.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 286aa    MW: 32233.6 Da    PI: 5.1424
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY48978.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17e-162869950
                HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                rq  f kR++++  KA+EL +LCd+ v+++ ++++gk+ +++
  GAY48978.1 28 RQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWP 69
                8889*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MNPMDAETTQ VKRKRSVKLI EEHGGNSRQG NFEKRKETLK NKAHELETLC DVMVCLVCYG  60
PDGKVETWPE DKTKVNDMIN KYKELREMPV LMKKAEQRLD LLELFESKKQ KLMEKKKAFV  120
EKMFSILETK IDEASSVEEL GVVYNKVESK FASMRETIEL AIIEEQKNQQ FAAPPIWPQV  180
YGNNLLMSDY VSSSSNNNNA FGRQESCLFP PSQNHQINGG ENGNIGDNVM LPDNNFLPSE  240
IGNNFMLPDD SLLPGYVHAN EGAWAQEKFS GLIGGPCCNC GRGPSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11242KRKRSVKLIEEHGGNSRQGNFEKRKETLKNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.15e-15M-type_MADS family protein