PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY49090.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29429.6 Da    PI: 7.1167
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY49090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.66e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rie+ +nrqvtfskRr g+lKKA ELSvLCdae+ +iifs tgkl e++s
  GAY49090.1 10 RIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCS 59
                9***********************************************96 PP
2K-box61.82.8e-2183169994
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                 ++++++e  ++el +++ke++nL+ ++R++ G+ dL+s +l+eL qLe+qLe s+kk+R +K+e+l++q+++l +kek+l+een+++
  GAY49090.1  83 VNNHDSEAIYNELGRMRKETHNLELSLRRYTGDiDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQI 169
                 66778899************************989*************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MGRGKIEIAR IESRTNRQVT FSKRRGGLLK KARELSVLCD AEIGLIIFSC TGKLTEFCSE  60
STSIEEIIRR YQAAKGVRIP AGVNNHDSEA IYNELGRMRK ETHNLELSLR RYTGDIDLNS  120
VKLEELTQLE HQLECSVKKV RVRKMEILRQ QTDNLLRKEK MLEEENEQIF SLFKDNNNQM  180
AWEQQQQQQA AMVSKFEEHG QVLDQFPFSG EAQPSSVLEL AIPHYQPFRL QPTQPNLQDF  240
GLHFPTFGIL YILF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.28e-56MIKC_MADS family protein