PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY49595.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 373aa MW: 40668.4 Da PI: 7.2755

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY49595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.0005	231	269	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq GAY49595.1 231 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 269 6677889999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MNRGILQSSP VQQMMAGNPN WWNINSMRPP TPQASPFLPP PANNLFPQYP SCYDNQEQLP 60 ESWSQLLLGR MVDEEDKSGM VGHFQTKKVE NWEEQILHHS SSSANSVVNV KQEINPAANS 120 YFYGHANDDH FQAAAASAAT KTTSWSQVMP PAAAASSPNN KSCVTSFSSN MLDFTSTKAD 180 ARHPPPDRSS EVMMMMSDSD RCNSTASGGV AKKARVQSSS SSSTQSTFKV RKEKLGDRIT 240 ALHQLVSPFG KTDTASVLLE AIGYIRFLQS QIEALSLPYL GSSGSAAMRQ QQHSQHPVQG 300 ERNCIFPEDP GQLLNDNCMK RKGTSDHQES QEEVKKSLRS RGLCLVPVSC TLQVGSDNGA 360 DYWAPALGGG GLR

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MNRGILQSSP VQQMMAGNPN WWNINSMRPP TPQASPFLPP PANNLFPQYP SCYDNQEQLP  60
ESWSQLLLGR MVDEEDKSGM VGHFQTKKVE NWEEQILHHS SSSANSVVNV KQEINPAANS  120
YFYGHANDDH FQAAAASAAT KTTSWSQVMP PAAAASSPNN KSCVTSFSSN MLDFTSTKAD  180
ARHPPPDRSS EVMMMMSDSD RCNSTASGGV AKKARVQSSS SSSTQSTFKV RKEKLGDRIT  240
ALHQLVSPFG KTDTASVLLE AIGYIRFLQS QIEALSLPYL GSSGSAAMRQ QQHSQHPVQG  300
ERNCIFPEDP GQLLNDNCMK RKGTSDHQES QEEVKKSLRS RGLCLVPVSC TLQVGSDNGA  360
DYWAPALGGG GLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-87	bHLH family protein