PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50166.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 388aa MW: 42640.4 Da PI: 8.4172

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32	2.1e-10	25	45	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCk+G++CkF+H++ GAY50166.1 25 QYYLKTGTCKFGATCKFHHPR 45 59*****************96 PP
2	zf-CCCH	37.1	5.2e-12	69	91	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ GAY50166.1 69 ECAYYLRTGQCKFGSTCKFHHPQ 91 7********************97 PP
3	zf-CCCH	38.7	1.7e-12	227	252	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ GAY50166.1 227 DQPECQFYMKTGDCKFGAVCRFHHPR 252 689*********************96 PP
4	zf-CCCH	39.7	7.9e-13	298	323	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f++r+G+Ck+G++CkF H++ GAY50166.1 298 GEPLCIFYSRYGICKFGPSCKFDHPM 323 689*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MWREISFLIV SAEFGKLICC FHQLQYYLKT GTCKFGATCK FHHPRDKAGI AGRVSLNVLG 60 YPLRPNEIEC AYYLRTGQCK FGSTCKFHHP QPNNMMVSLR GSPVYPTVQS PTTPSQQSYA 120 GGITNWSRAS FIPSPRWQGP SSYAPMLLPQ GMVSVPGWNT YSGQLGSVSS SENLQQTSGN 180 SQIYGASRQT EPSNSGSQGT MSPFRSGSIP VGFYALQRES VFPERPDQPE CQFYMKTGDC 240 KFGAVCRFHH PRERLLPVPD CVLSPIGLPL RPVKRTFTVY AEDATETLNL IISHAFMGEP 300 LCIFYSRYGI CKFGPSCKFD HPMGIFTYNL SASSSADAPV RRFLGSSSAT GALNLSSEGL 360 VEAGSGRRLS LPETRQMSSG DDEIDTEG

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MWREISFLIV SAEFGKLICC FHQLQYYLKT GTCKFGATCK FHHPRDKAGI AGRVSLNVLG  60
YPLRPNEIEC AYYLRTGQCK FGSTCKFHHP QPNNMMVSLR GSPVYPTVQS PTTPSQQSYA  120
GGITNWSRAS FIPSPRWQGP SSYAPMLLPQ GMVSVPGWNT YSGQLGSVSS SENLQQTSGN  180
SQIYGASRQT EPSNSGSQGT MSPFRSGSIP VGFYALQRES VFPERPDQPE CQFYMKTGDC  240
KFGAVCRFHH PRERLLPVPD CVLSPIGLPL RPVKRTFTVY AEDATETLNL IISHAFMGEP  300
LCIFYSRYGI CKFGPSCKFD HPMGIFTYNL SASSSADAPV RRFLGSSSAT GALNLSSEGL  360
VEAGSGRRLS LPETRQMSSG DDEIDTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-125	C3H family protein