PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY50190.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 239aa    MW: 26244.8 Da    PI: 8.3604
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY50190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.42e-322103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q+++e+
  GAY50190.1   2 SCNGCRVLRKGCSESCILRPCLqwiesPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVET 100
                 6***********************************************************************************************998 PP

      DUF260  95 all 97 
                 +l+
  GAY50190.1 101 VLR 103
                 876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MSCNGCRVLR KGCSESCILR PCLQWIESPE SQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPV PELLNSCGGS  120
PTPTSDDVSE AEVTCTDMSR LQDRSFPSSH CRFSSSRSKV SPAKRKRVEE SAMKLQQSDL  180
DLRLTPRFTG KVPPEVRRRP GTPSMNSEES GTTTCFESGL TDHRYLNGAE ERKLLNLFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-90LBD family protein