PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY50241.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 282aa    MW: 31886.1 Da    PI: 9.1268
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY50241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.51.8e-23955147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                k+ien + r++tf+kR+ g+ KKA+E+S+LCd+eva+iifs+ gkl 
  GAY50241.1  9 KKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLI 55
                68*******************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MGRVRLQIKK IENRTYRHIT FAKRKSGLVK KAYEISTLCD VEVALIIFSP AGKLILFDGK  60
KSNNGGRDRK MSVDSELEEI ENEITKLCAE LEEVEKQLQY FLKSPSCIKS ASEAEFLEGF  120
LEETLKLVYI RKKRPMHSQS AAASGFMMGS SNYCLGNWPQ QYDAGFLNAR KFSNSSQFQH  180
LRNESSQPFA EVFPTALPNL YGTGFPTGNI VSSSSRPEVN GYIRQLPRDK FFNNADFSQG  240
MNNIQQGRRA ADQHEENKVA DATLACRGSC SQYRDRGLPF PY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-23MIKC_MADS family protein