PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50410.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 261aa MW: 28759.9 Da PI: 4.8308

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.9e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+++ +q+G+g +W + +++ g++R++k+c++rw++yl GAY50410.1 14 RGPWSAEEDSILKNYLEQFGNGgNWIALPKKAGLNRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	38.2	3.3e-12	69	112	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ ++ +G++ W+ Ia+ ++ gRt++++k++w++ GAY50410.1 69 GGFTKEEDTIICNLYCTMGTHVWSVIASQLP-GRTDNDVKNYWNT 112 569**************************.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MGRAPCCDKA NVKRGPWSAE EDSILKNYLE QFGNGGNWIA LPKKAGLNRC GKSCRLRWLN 60 YLRPDIKHGG FTKEEDTIIC NLYCTMGTHV WSVIASQLPG RTDNDVKNYW NTKLKKNVLA 120 GKLSDNTQVS VSTIPEEFGN SSYYLSADSA AGAFLPYVSD INCYYHQNHP APQGMIFDPS 180 ANSNYGNKMT STTQEAAAAS SLSISSSSST LENNYDLRSA NGNVEDEGIL LDDFDFEYSY 240 ELLNGFDFEK ASNEVAQCLG G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65790.1	9e-68	MYB family protein