PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50463.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HRT-like

Protein Properties

Length: 485aa MW: 54104.1 Da PI: 9.8942

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55	1.4e-17	242	272	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dGsvC+++Pv+ RKRC eH GmRi GAY50463.1 242 ICGVSLGDGSVCQMPPVEQRKRCIEHRGMRI 272 8*****************************7 PP
2	HRT-like	52.9	6.1e-17	362	392	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+ G++C+rqPvkgR RCe+HKG +i GAY50463.1 362 ICGVELGGGTFCTRQPVKGRVRCEQHKGWKI 392 8***************************775 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
LALPRQIIEK MEAALLAIIA RIQREDCERT NHDSQFSKWK ELVGPSDWEN HSHGKEGAER 60 YKVHNLPNDT GPGLYELGIA VPGAGVIVVY VGQAESVRAR LQAYGRTGAH LNSGCDSGRY 120 FEDIFRRGYS IVYRSAPMKN KEDAEKTERK ILDKFDYAWN KGNNGKRRHA DVRRKLDEVA 180 SNNIQFPKTI RNLLRFNHWP ADIKIKASPE GHNFLPQIIK FTKSQPRLVL DRYGADEGHT 240 GICGVSLGDG SVCQMPPVEQ RKRCIEHRGM RIRASTLTMK GKAKVCDVDP TKLPMVAQKC 300 SVSEGEERNR RKNCGSNSKS TGSSQYGHDA YVDSNAPGAL NSPEMYRQGR VQSKAKLQYD 360 TICGVELGGG TFCTRQPVKG RVRCEQHKGW KIQGTKSTSV AQDHKSDVYG ASYGSFVCGA 420 QTLDGSYCRR QVKANTKCWQ HSDKSLTIRS WSDWNYGGSS LCGAPTRNGS SCRRSVKGGG 480 RCWQH

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

LALPRQIIEK MEAALLAIIA RIQREDCERT NHDSQFSKWK ELVGPSDWEN HSHGKEGAER  60
YKVHNLPNDT GPGLYELGIA VPGAGVIVVY VGQAESVRAR LQAYGRTGAH LNSGCDSGRY  120
FEDIFRRGYS IVYRSAPMKN KEDAEKTERK ILDKFDYAWN KGNNGKRRHA DVRRKLDEVA  180
SNNIQFPKTI RNLLRFNHWP ADIKIKASPE GHNFLPQIIK FTKSQPRLVL DRYGADEGHT  240
GICGVSLGDG SVCQMPPVEQ RKRCIEHRGM RIRASTLTMK GKAKVCDVDP TKLPMVAQKC  300
SVSEGEERNR RKNCGSNSKS TGSSQYGHDA YVDSNAPGAL NSPEMYRQGR VQSKAKLQYD  360
TICGVELGGG TFCTRQPVKG RVRCEQHKGW KIQGTKSTSV AQDHKSDVYG ASYGSFVCGA  420
QTLDGSYCRR QVKANTKCWQ HSDKSLTIRS WSDWNYGGSS LCGAPTRNGS SCRRSVKGGG  480
RCWQH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	8e-73	HRT-like family protein