PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY50586.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 539aa    MW: 60813 Da    PI: 7.9434
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY50586.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-0791112527
                 --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 +C f++  G+C++GdrC+F Hgp
  GAY50586.1  91 PCYFYFN-GFCSRGDRCSFLHGP 112
                 79*9**9.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    
MEEELQKRNT DCVYFLASPL TCKKGLDCEY RHNEIARLNP RDCWYWLAGN CINPRCGFRH  60
PPLDAHVTEA PSESVSLPCQ SSIPVNKTSI PCYFYFNGFC SRGDRCSFLH GPDGIAPNGK  120
SSKSASAVTD ALLSENKTSA GDGTGSPPTE IRPNPSEAPL KLAVDVRVQP KGHLLQSAPK  180
RIPERRASPQ ISLSEGETVA VVKSDSMVAA EGFMKTKSHL YTDWSSDEHA DDHVEPEERL  240
ESSPGFDVLV DNENRAENLG FEDDSEYLLA TNREHRELNG HFLGYDFEGP IEYDPMYPES  300
EPHEGETYNV HYYLDNEHIL DKVREYPGRA RERILDSMLS RKRKLFPMKV SVDDCNADLR  360
DYLRKRRVVD GHSIVHSTRR HESSRLMGRI QGRHRGLLLH GRLASEFGKN YIESHGHKGT  420
LPNGANQHGW ARHSKSNILR QHHKGKRLLK RKSHLSAISR KPFSSERRSS QTETAFTGPK  480
SLAEIREEKK KAEESGGHFG KVGHLSRTLT DFQGPKPLSE ILKEKRRPGT VSDADTWSC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1450454KRKSH