PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50715.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 354aa MW: 39224.2 Da PI: 6.951

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50715.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl GAY50715.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	45.6	1.6e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l GAY50715.1 67 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFQ 120 SAALEPHMPQ DSSATSNNTH PFSKTGNSFS NERRSLDFSN QAASNNNLRL HQQGSSYASS 180 TENISRLLEG WMRSSPKTSS NSSSALLIKG NGNIFDNRSI ENSIGTYRPK EEQEGGGSGG 240 GGGGGDLISN EEFISILSFE QNLNNVTWDK ASTGDSSAKG SSTQDSANNE DQSTKVNNNN 300 NDNNDIIANA EKKQRSDQNI HNPPLSFLEK WLLDESTGQV EEINQIMELS DSMF

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFQ  120
SAALEPHMPQ DSSATSNNTH PFSKTGNSFS NERRSLDFSN QAASNNNLRL HQQGSSYASS  180
TENISRLLEG WMRSSPKTSS NSSSALLIKG NGNIFDNRSI ENSIGTYRPK EEQEGGGSGG  240
GGGGGDLISN EEFISILSFE QNLNNVTWDK ASTGDSSAKG SSTQDSANNE DQSTKVNNNN  300
NDNNDIIANA EKKQRSDQNI HNPPLSFLEK WLLDESTGQV EEINQIMELS DSMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	2e-96	MYB family protein