PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50782.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 280aa MW: 31915.2 Da PI: 9.4743

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50782.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99	1.9e-31	38	87	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ GAY50782.1 38 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 87 79***********************************************8 PP
2	K-box	102.3	6.2e-34	108	202	6	100
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s +ea+++ +qqe++kL+++i+++q+ +Rh+lGe L++L++keL++Le +Lek++ ++RskKne+ll++ie + k+e +lq++n++Lr+++ e GAY50782.1 108 PGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 202 334899************************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MVEGCSSSKL PATMEFPKQN PESSSQSKKI GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK 60 AYELSVLCDA EVALIVFSSR GRLYEYANNS VRATIDRYKK ACADSSNPGS ITEANTQFYQ 120 QEATKLRRQI REIQNLNRHI LGEALSTLNF KELKNLEARL EKGIGRVRSK KNEMLLAEIE 180 FMEKREIQLQ NDNMYLRARI SENERAQQER QSESMMQQGG GHVYEPAASQ PYDRNFLPVN 240 LLEPNHQYAR QDDQPPLQLV IAASTSEICK SLSATLHLSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	1e-114	MIKC_MADS family protein