PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50954.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HB-other

Protein Properties

Length: 518aa MW: 58521.7 Da PI: 7.269

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	20	74	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ q+ +Le+++++++yp++e++ + A+++gLte+qV+ WF+ rR kek+ GAY50954.1 20 KRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 74 78899*************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MDSSEMHSEE NKVSLEKNIK RRYKTPAQVM ALEKFYNEHK YPTEEMKSQV AEQIGLTEKQ 60 VSGWFCHRRL KEKRLSVDEA FVGGRQDRSS GVIQDRGSGL RQDSCGSTKQ GDYRSIEPRE 120 VQSRMLYCHD FPATDLAYDR NQYAAHASER DDTSSESSSF LQDRLYSESD KPYANETSRF 180 VRQNGDVTPV RCNIGKSKEY KPSGYLKVKG ESENAAISAV KRQLGRHYRE DGPPLGVDFD 240 PLPPGAFESP SGDPVNEPFY VGNSRWSNSP DVPEIDKPRA LGTRYEVDSS KMDLQDSYID 300 ENLNSKRSDY AGTKSHNQLK QKSPLLHYSN FSPHQNSSLN AYEDSTPVYD GNHCYSLSSK 360 HDAEWMGLNS VMNHHEPHGG KTNSEEAKPL LNDNHVVSSK MVRNSNYFTR PSNFTLGISE 420 SLDAKDKGTS TKMAKVKKLY KEKKAIKGLR DPVSVKTHLN NEMNVVKRLK GELPQRDYIA 480 KASYAEIPRW TNPIKGSAAE MPSSFSEDET AETNSSME

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MDSSEMHSEE NKVSLEKNIK RRYKTPAQVM ALEKFYNEHK YPTEEMKSQV AEQIGLTEKQ  60
VSGWFCHRRL KEKRLSVDEA FVGGRQDRSS GVIQDRGSGL RQDSCGSTKQ GDYRSIEPRE  120
VQSRMLYCHD FPATDLAYDR NQYAAHASER DDTSSESSSF LQDRLYSESD KPYANETSRF  180
VRQNGDVTPV RCNIGKSKEY KPSGYLKVKG ESENAAISAV KRQLGRHYRE DGPPLGVDFD  240
PLPPGAFESP SGDPVNEPFY VGNSRWSNSP DVPEIDKPRA LGTRYEVDSS KMDLQDSYID  300
ENLNSKRSDY AGTKSHNQLK QKSPLLHYSN FSPHQNSSLN AYEDSTPVYD GNHCYSLSSK  360
HDAEWMGLNS VMNHHEPHGG KTNSEEAKPL LNDNHVVSSK MVRNSNYFTR PSNFTLGISE  420
SLDAKDKGTS TKMAKVKKLY KEKKAIKGLR DPVSVKTHLN NEMNVVKRLK GELPQRDYIA  480
KASYAEIPRW TNPIKGSAAE MPSSFSEDET AETNSSME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	3e-91	HB-other family protein