PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50981.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 472aa MW: 55162.8 Da PI: 10.3906

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50981.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	356	381	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y C C++sF +k +L+ H ++ + GAY50981.1 356 YHCDmdGCTMSFGTKQELVLHKKNiC 381 889999***************99866 PP
2	zf-C2H2	14.8	8.2e-05	381	403	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H GAY50981.1 381 CPvkGCGKKFFSHKYLVQHRRVH 403 9999*****************99 PP
3	zf-C2H2	13.7	0.00019	439	465	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H GAY50981.1 439 YVCAepGCGQTFRFVSDFSRHKRKtgH 465 899999*****************9666 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MISPAEYSRQ LQFNRVPKSK QAEWIEREDA ASDDSLEDYP HRLQHKKIPN IKQPKCIESE 60 DPVLDNLLEK STHRLHHQRI LKSKQAKCVE REDAVSDDLL EDSSHMLPRR SQKSKQAKWM 120 VREDAVSDDS LEDNSRQLYQ RIPKSKPSKW IEREDAVSDD SLEDNSHQQH KRIPRDKQSK 180 CTEMEDTVFY DSAEDKIRQF RRIARKRANF TEREDAVLYD LLENKSHRRH CRTLRSKQLR 240 TETLRKMKRE TPSHMKPGKS RLTKQETSRL VKQVTSRQHS VKSDQNAKLF DSVVEQELEG 300 GPSTRLRKRI PKPQKEFETK PKEKNQAAKK KVKNASVVKA PAGLNNAKIK DEEAGYHCDM 360 DGCTMSFGTK QELVLHKKNI CPVKGCGKKF FSHKYLVQHR RVHLDDRPLK CPWKGCKMTF 420 KWAWARTEHI RVHTGARPYV CAEPGCGQTF RFVSDFSRHK RKTGHSAKKS RG

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MISPAEYSRQ LQFNRVPKSK QAEWIEREDA ASDDSLEDYP HRLQHKKIPN IKQPKCIESE  60
DPVLDNLLEK STHRLHHQRI LKSKQAKCVE REDAVSDDLL EDSSHMLPRR SQKSKQAKWM  120
VREDAVSDDS LEDNSRQLYQ RIPKSKPSKW IEREDAVSDD SLEDNSHQQH KRIPRDKQSK  180
CTEMEDTVFY DSAEDKIRQF RRIARKRANF TEREDAVLYD LLENKSHRRH CRTLRSKQLR  240
TETLRKMKRE TPSHMKPGKS RLTKQETSRL VKQVTSRQHS VKSDQNAKLF DSVVEQELEG  300
GPSTRLRKRI PKPQKEFETK PKEKNQAAKK KVKNASVVKA PAGLNNAKIK DEEAGYHCDM  360
DGCTMSFGTK QELVLHKKNI CPVKGCGKKF FSHKYLVQHR RVHLDDRPLK CPWKGCKMTF  420
KWAWARTEHI RVHTGARPYV CAEPGCGQTF RFVSDFSRHK RKTGHSAKKS RG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-75	C2H2 family protein