PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50982.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 497aa MW: 55538.8 Da PI: 4.7629

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50982.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.4	6.6e-10	179	199	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++rtG Ck+G C+F+H GAY50982.1 179 ECKYYLRTGGCKFGKACRFNH 199 7******************** PP
2	zf-CCCH	39.7	7.8e-13	222	246	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ GAY50982.1 222 GEKECPYYMRNGSCKYGANCRFNHP 246 7899********************9 PP
3	zf-CCCH	28.2	3.2e-09	385	411	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+rtG Cky ++Ck++H++ GAY50982.1 385 PGQPECSYFLRTGDCKYKSNCKYHHPK 411 5789*********************96 PP
4	zf-CCCH	33.3	8.3e-11	432	456	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C++++r+G+Ck+G+ Ck+ H+ GAY50982.1 432 GQNVCSYYSRYGICKFGPACKYDHP 456 6678********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MELSELISVP NLNHEKTKFE LGLQSSSPKS DLDPPPSDLD YTAGIEEELR NLDLREAEEI 60 DSIKAAEIEI VVEEEDEEEE EEEEEESESD ENNKSNIIVQ NEIQNENEYG NQMRKRYPYP 120 VRPDAQDCTF YMKTVSSFFC LPFVGFKSSK EKVKEREELI ERPGQSQSQG QSESQSQIEC 180 KYYLRTGGCK FGKACRFNHT RAKSTVAPVL ELNFLGLPIR PGEKECPYYM RNGSCKYGAN 240 CRFNHPDPTA VGGSDSPSGY GNGGSVSSQA PSQASIGSWS SPRALNEPAP FVPMMYSPTP 300 GVPSQNSEWN GYQVVALLLL CSFNYLSNRF LIGLICLWHV KSPLYPQERS VQSAPTYVIN 360 NNPLVDNVQI IHQPQMLVDE FPERPGQPEC SYFLRTGDCK YKSNCKYHHP KNRIPKSPPC 420 TLSDKGLPLR PGQNVCSYYS RYGICKFGPA CKYDHPIHSD ASAEYGLDPP PSFGDSTTRQ 480 ETGMAGTGNG NGSDKNI

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MELSELISVP NLNHEKTKFE LGLQSSSPKS DLDPPPSDLD YTAGIEEELR NLDLREAEEI  60
DSIKAAEIEI VVEEEDEEEE EEEEEESESD ENNKSNIIVQ NEIQNENEYG NQMRKRYPYP  120
VRPDAQDCTF YMKTVSSFFC LPFVGFKSSK EKVKEREELI ERPGQSQSQG QSESQSQIEC  180
KYYLRTGGCK FGKACRFNHT RAKSTVAPVL ELNFLGLPIR PGEKECPYYM RNGSCKYGAN  240
CRFNHPDPTA VGGSDSPSGY GNGGSVSSQA PSQASIGSWS SPRALNEPAP FVPMMYSPTP  300
GVPSQNSEWN GYQVVALLLL CSFNYLSNRF LIGLICLWHV KSPLYPQERS VQSAPTYVIN  360
NNPLVDNVQI IHQPQMLVDE FPERPGQPEC SYFLRTGDCK YKSNCKYHHP KNRIPKSPPC  420
TLSDKGLPLR PGQNVCSYYS RYGICKFGPA CKYDHPIHSD ASAEYGLDPP PSFGDSTTRQ  480
ETGMAGTGNG NGSDKNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-117	C3H family protein