PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY51146.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 764aa    MW: 84060.9 Da    PI: 6.452
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY51146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.7e-21110165156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  GAY51146.1 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 165
                 7999************************************************9987 PP
2START222.31.6e-692835035206
                 HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT. CS
       START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg. 88 
                 + ++el k+a+a+ p+W +s     e++n+de++++f+ +++      +s+ea+r+ gvv+ +l++lv++++d++ qW+ +++    ka+t++vi+ g 
  GAY51146.1 283 QGMEELKKMATAGGPLWIRSLetgrEILNYDEYVKEFSAENSsngksnRSIEASRDAGVVFVDLPKLVQSFMDVN-QWKAMFPclisKAATVDVICGGe 380
                 568999*******************************998889********************************.*********************** PP

                 .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
       START  89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                      ga+qlm+aelq+l+p+vp R+++fvRy++ql+a++w+ivdvS+d  +++  ++s+++++++pSg+++e+ksngh+kvtwveh ++++ ++h ++
  GAY51146.1 381 gpnrnGAVQLMFAELQMLTPMVPtREVYFVRYCKQLSAEQWAIVDVSIDKVEENI-DASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMY 478
                 *****************************************************98.9****************************************** PP

                 HHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 182 rslvksglaegaktwvatlqrqcek 206
                 rs+v+sgla+ga++w+ tlq qce+
  GAY51146.1 479 RSIVNSGLAFGARHWMTTLQLQCER 503
                 ***********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    
MGVVDMSNNP PTSRTKDFFA SPALSLSLAG IFRGAGASAA ANNEVEEGYE GSGGAGGGSK  60
REETTVEISS ENSGHTRSRS DADFDGGGDG DDDDGDGDGD GDSKNKKKKR KKYHRHTAEQ  120
IREMEALFKE SPHPDEKQRQ QLSKQLGLAP RQVKFWFQNR RTQIKTIQER HENSLLKSEI  180
EKLREENKAM REAINKACCP NCGMATTSRD TSMTTEEQQL RIENARLKAE VEKLRAAVGK  240
CPPGATSTSS CSAGNDQENR SSLDFYTGIF GIDKSRIMEL VNQGMEELKK MATAGGPLWI  300
RSLETGREIL NYDEYVKEFS AENSSNGKSN RSIEASRDAG VVFVDLPKLV QSFMDVNQWK  360
AMFPCLISKA ATVDVICGGE GPNRNGAVQL MFAELQMLTP MVPTREVYFV RYCKQLSAEQ  420
WAIVDVSIDK VEENIDASLA KCRKRPSGCI VEDKSNGHCK VTWVEHLECQ KGTVHTMYRS  480
IVNSGLAFGA RHWMTTLQLQ CERLVFFMAT NVPTKDSSGV ATLAGRKSIL KLAQRMTWSF  540
CRAIGASSYH VWNKVTSKTG EDIRVSSRKN LNDPGEPLGV ILCAVSSVWL PVSPNVLFDF  600
LRDEAHRNEW DIMSNGGPVQ TIANLAKGQD RGNAVNIQTM KSKENSMWLL QDSYTNAYES  660
MVVYAPVDIT GMQSVITGCD SSNIAILPSG FSILPDGLES RPLVITSRQE EKITEGGSLL  720
SIAFQILTNN SPAAKLTMES VDSVNTLISC TLRNIKTSLQ CEDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111KKKKRK
2106112KKKKRKK
3108112KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein