PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY51848.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Protein Properties

Length: 409aa MW: 46985.5 Da PI: 8.5109

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY51848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.5	1.6e-10	17	91	17	97
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++p +f+++++ + s tl ++g + +v l r+ ++++++ +GW+eF + +++g f+vF+++g+s f +v +f GAY51848.1 17 RIPENFVRNFKDD--LSAAATLIVPNGMVSRVGL--RRLDNKVWFYDGWQEFMERYFIRVGYFLVFRYEGNSAF--NVYIF 91 69***988766..8889***********..********************************9999..88887 PP
2	B3	61.9	1.1e-19	308	399	4	99
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 vl ps+ k ++++lp fae+h +g+ ++ ++l+ ++g++W v++ yr+++ +++GW eF +n+L egD++vF++ + +ef l+v+vfr GAY51848.1 308 VLRPSYLYKGCIMYLPSCFAEKHlNGV--CG-FIKLQLSDGKQWPVRCLYRGGR--AKFSQGWYEFTVENRLGEGDVCVFEVLRAREFVLKVTVFRV 399 7889*****************8777..44.59999999****666665..5699*****************9988*******996 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MVNGESGGIH LILTLERIPE NFVRNFKDDL SAAATLIVPN GMVSRVGLRR LDNKVWFYDG 60 WQEFMERYFI RVGYFLVFRY EGNSAFNVYI FNLPSSEINY QPNALSNFEV PNHSKQYHIF 120 AEMEDDDSEH VDQPTVNKTF NPPSFQNLLN SSKLSNSING AGEANLQRLK GLINSLVGNY 180 YTLDIDVQFN IYESKDLLNA VKLYSQDGET PKLKKPGRKR KIDPSKIFGL AFLFNPVMSE 240 EFKFLIKQFY KNADVQASSA QEVHDGEMQF RFYESASARK RTVTAEERER AINAAKAFEP 300 SNPFCRVVLR PSYLYKGCIM YLPSCFAEKH LNGVCGFIKL QLSDGKQWPV RCLYRGGRAK 360 FSQGWYEFTV ENRLGEGDVC VFEVLRAREF VLKVTVFRVS ESAGFMSRH

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MVNGESGGIH LILTLERIPE NFVRNFKDDL SAAATLIVPN GMVSRVGLRR LDNKVWFYDG  60
WQEFMERYFI RVGYFLVFRY EGNSAFNVYI FNLPSSEINY QPNALSNFEV PNHSKQYHIF  120
AEMEDDDSEH VDQPTVNKTF NPPSFQNLLN SSKLSNSING AGEANLQRLK GLINSLVGNY  180
YTLDIDVQFN IYESKDLLNA VKLYSQDGET PKLKKPGRKR KIDPSKIFGL AFLFNPVMSE  240
EFKFLIKQFY KNADVQASSA QEVHDGEMQF RFYESASARK RTVTAEERER AINAAKAFEP  300
SNPFCRVVLR PSYLYKGCIM YLPSCFAEKH LNGVCGFIKL QLSDGKQWPV RCLYRGGRAK  360
FSQGWYEFTV ENRLGEGDVC VFEVLRAREF VLKVTVFRVS ESAGFMSRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-125	B3 family protein