PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY51975.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 157aa    MW: 17734.9 Da    PI: 8.2256
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY51975.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601201.4e-37121121101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCa+Ck++r+kC++ C lap fpa++ ++f+n+hklFG+sn++k+++++++++r++a++s++ e+++r +dPv+G++gv+++l++q+e  ++el ++++
  GAY51975.1  12 ACASCKHQRKKCEETCELAPFFPASRYREFQNAHKLFGVSNIQKIINSVDPSQRKEAAESILIEGNIRSNDPVHGCLGVVRNLKSQIEYYEKELGAVNQ 110
                 7*********************************************************************************************99998 PP

      DUF260 100 el 101
                 +l
  GAY51975.1 111 QL 112
                 85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MSKEFGSGSS QACASCKHQR KKCEETCELA PFFPASRYRE FQNAHKLFGV SNIQKIINSV  60
DPSQRKEAAE SILIEGNIRS NDPVHGCLGV VRNLKSQIEY YEKELGAVNQ QLPFFRDKEK  120
QHQHHAAPRA SRKQPLEFGS DEEEESVDVS SLKGKKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.18e-43LBD family protein