PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY52021.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 642aa    MW: 72088.9 Da    PI: 5.3493
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY52021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.51.8e-1362736422374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL++cA  +s+g+ e+a++++++l++++s +gdp qR+aay++e+Laar+a s++ lykal+++e +   ss++laa+++++ev+P++kf++++aN 
  GAY52021.1 273 KQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---SSDRLAAMQILFEVCPCFKFGFMAANG 368
                 589*****************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aI ea++ge+rvHiiDfdi+qG Q+++L+q++as p++ p+lR+Tgv++pes+      l+ +g rL+++Ae+lgvpfef++ v ++++ +++++L+++
  GAY52021.1 369 AIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVqrLVGGLQIIGLRLESLAEALGVPFEFHA-VPSKTSLVTPSMLECR 466
                 ***************************************************99666789***********************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yys++f+sl+a+lpres++r++vEr++l+r+ivn
  GAY52021.1 467 PGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVN 565
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++aceg+er+er e ++kWr+r+++aGF++ p+s ++++ ++ l++++ ++ y+++ee g l +gW+d++L+++SaW+
  GAY52021.1 566 IIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYCDR-YKLKEELGLLHFGWEDKSLIVASAWK 642
                 ************************************************966.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    
RNSKRKKKLH FLLNLRRSFS KEEKKEKYLD LTILISFAVP FGGHFLALDE IPQKSMSLVS  60
SPEPSATSYR KTKLYTLKGS GHSSALSTQA FGSDKHKMMC QTDSYSSENY EDYILDSPTE  120
ELIHPSSSAD SGNSFQRQGA PSHQLRAGSS FPMAAQSPLD SSFMSMRRCH GYQPSFESGY  180
LENQCPDPVD YDEDTMRLKL QELERALLDD TVGDEDDDMF TTIQNMEVEG EWPEPVQNVP  240
FHDSPKESSS SDSILSSISS NKEVSQLSPR TPKQLLIDCA ATLSDGNIEE ATTIINELRQ  300
MVSIQGDPPQ RIAAYMVEGL AARMAASGKF LYKALKCKEP PSSDRLAAMQ ILFEVCPCFK  360
FGFMAANGAI IEAFKGEKRV HIIDFDINQG SQYITLIQTI ASLPGNRPHL RLTGVDDPES  420
VQRLVGGLQI IGLRLESLAE ALGVPFEFHA VPSKTSLVTP SMLECRPGEA LVVNFAFQLH  480
HMPDESVSTV NQRDQLLRMV KSLNPKLVTV VEQDMNTNTS PFFPRFIEAY NYYSVVFESL  540
DATLPRESQD RMNVERQCLA RDIVNIIACE GEERIERYEL AGKWRARMTM AGFTSCPMSA  600
DVTDMIRKLI KQYCDRYKLK EELGLLHFGW EDKSLIVASA WK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein