PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY52022.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 587aa    MW: 65590.2 Da    PI: 4.7719
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY52022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.91.4e-1362185872374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL++cA  +s+g+ e+a++++++l++++s +gdp qR+aay++e+Laar+a s++ lykal+++e +   ss++laa+++++ev+P++kf++++aN 
  GAY52022.1 218 KQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---SSDRLAAMQILFEVCPCFKFGFMAANG 313
                 589*****************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aI ea++ge+rvHiiDfdi+qG Q+++L+q++as p++ p+lR+Tgv++pes+      l+ +g rL+++Ae+lgvpfef++ v ++++ +++++L+++
  GAY52022.1 314 AIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVqrLVGGLQIIGLRLESLAEALGVPFEFHA-VPSKTSLVTPSMLECR 411
                 ***************************************************99666789***********************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yys++f+sl+a+lpres++r++vEr++l+r+ivn
  GAY52022.1 412 PGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVN 510
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++aceg+er+er e ++kWr+r+++aGF++ p+s ++++ ++ l++++ ++ y+++ee g l +gW+d++L+++SaW+
  GAY52022.1 511 IIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYCDR-YKLKEELGLLHFGWEDKSLIVASAWK 587
                 ************************************************966.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    
MSLVSSPEPS ATSYRKTKLY TLKGSGHSSA LSTQAFGSDK HKMMCQTDSY SSENYEDYIL  60
DSPTEELIHP SSSADSGNSF QRQGAPSHQL RAGSSFPMAA QSPLDSSFMS MRRCHGYQPS  120
FESGYLENQC PDPVDYDEDT MRLKLQELER ALLDDTVGDE DDDMFTTIQN MEVEGEWPEP  180
VQNVPFHDSP KESSSSDSIL SSISSNKEVS QLSPRTPKQL LIDCAATLSD GNIEEATTII  240
NELRQMVSIQ GDPPQRIAAY MVEGLAARMA ASGKFLYKAL KCKEPPSSDR LAAMQILFEV  300
CPCFKFGFMA ANGAIIEAFK GEKRVHIIDF DINQGSQYIT LIQTIASLPG NRPHLRLTGV  360
DDPESVQRLV GGLQIIGLRL ESLAEALGVP FEFHAVPSKT SLVTPSMLEC RPGEALVVNF  420
AFQLHHMPDE SVSTVNQRDQ LLRMVKSLNP KLVTVVEQDM NTNTSPFFPR FIEAYNYYSV  480
VFESLDATLP RESQDRMNVE RQCLARDIVN IIACEGEERI ERYELAGKWR ARMTMAGFTS  540
CPMSADVTDM IRKLIKQYCD RYKLKEELGL LHFGWEDKSL IVASAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein