PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY52086.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 394aa MW: 46353.8 Da PI: 8.8813

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY52086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.6	1.2e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien snrqvt+skRrng++KKA+E+ vLCda+v++iif+++gk+++yss GAY52086.1 9 KRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS 59 79***********************************************96 PP
2	SRF-TF	56.7	3.1e-18	206	242	15	51
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +RrngilKKA+E+ vLCda+v++ii++s+gk+++y+s GAY52086.1 206 RRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCS 242 6**********************************96 PP
3	K-box	83.9	3.4e-28	69	165	1	97
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 y+k+sgk+l++ak+e+l++e++++kke++++q ++Rhl+Ged++sL++keL+ Le++Le++l+ iR+k++e++ ++ ++ ++ e+e++ + Lr++ GAY52086.1 69 YHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQ 165 8999*********************************************************************999999999999999888888887 PP
4	K-box	77.2	4.4e-26	254	350	1	97
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 y+++sg++l++ k+e+l++e++++k+e++ +q ++Rhl Ged++sL+ keL Le++Le++l +iR+k++e + ++ ++ +++e+e++ + Lr++ GAY52086.1 254 YHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMERMRKNGKMMEEEHNYLKFVLRQQ 350 78899999*******************************************************************9999999999999999999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MGRGKIEIKR IENLSNRQVT YSKRRNGLIK KAKEIAVLCD AKVSLIIFAT SGKMHDYSSA 60 PMFEILEAYH KQSGKKLWDA KHENLYNEID RIKKENDSMQ IKLRHLKGED VTSLNHKELM 120 ALEDALENGL TGIRDKQSEM MERMRKNGKM LEEEHNYLKY VLRQQEIAKQ QQQQMALENN 180 VREIDPNGYH QRENDGYSSH MPLAFRRRNG ILKKAKEITV LCDAKVSLII YASSGKMHDY 240 CSPSTSLVDI LEQYHRQSGR RLWDPKHENL SNEIERIKRE NDRMQIKLRH LNGEDISSLN 300 PKELIALEDA LENGLVSIRD KQSEKMERMR KNGKMMEEEH NYLKFVLRQQ EIARQQQELA 360 MENSVSAEID YQRENHHDYA YHVQPIQPNL QERI

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MGRGKIEIKR IENLSNRQVT YSKRRNGLIK KAKEIAVLCD AKVSLIIFAT SGKMHDYSSA  60
PMFEILEAYH KQSGKKLWDA KHENLYNEID RIKKENDSMQ IKLRHLKGED VTSLNHKELM  120
ALEDALENGL TGIRDKQSEM MERMRKNGKM LEEEHNYLKY VLRQQEIAKQ QQQQMALENN  180
VREIDPNGYH QRENDGYSSH MPLAFRRRNG ILKKAKEITV LCDAKVSLII YASSGKMHDY  240
CSPSTSLVDI LEQYHRQSGR RLWDPKHENL SNEIERIKRE NDRMQIKLRH LNGEDISSLN  300
PKELIALEDA LENGLVSIRD KQSEKMERMR KNGKMMEEEH NYLKFVLRQQ EIARQQQELA  360
MENSVSAEID YQRENHHDYA YHVQPIQPNL QERI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	2e-70	MIKC_MADS family protein