PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY52087.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 133aa MW: 15325.7 Da PI: 9.9927

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY52087.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.3	1.8e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien snrqvt+skRrng++KKA+E+ vLCda+v++iif+++gk+++yss GAY52087.1 9 KRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS 59 79***********************************************96 PP
2	K-box	69.5	1.1e-23	69	131	1	63
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslk 63 y+k+sgk+l++ak+e+l++e++++kke++++q ++Rhl+Ged++sL++keL+ Le++Le++l+ GAY52087.1 69 YHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLT 131 899**********************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence
MGRGKIEIKR IENLSNRQVT YSKRRNGLIK KAKEIAVLCD AKVSLIIFAT SGKMHDYSSA 60 PMFEILEAYH KQSGKKLWDA KHENLYNEID RIKKENDSMQ IKLRHLKGED VTSLNHKELM 120 ALEDALENGL TVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	3e-65	MIKC_MADS family protein