PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY52453.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LFY
Protein Properties Length: 398aa    MW: 44468.3 Da    PI: 7.8355
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY52453.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY637.32.3e-19413771385
     FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap.....leaaaaaaark..lr.....eleelfkayGvryltvakiaelGftvstLvdmkdeeld 87 
                 mdpeaf+aslfkwdpr ++a+ppar++ e++ ++++     +    aaaa++  +r     +leelf+ayG+ry t+akiaelGftv+tL+dmkdeeld
  GAY52453.1   1 MDPEAFTASLFKWDPRVVVAPPPARVQLEQVSQPPAvplgaA----AAAAYSalVRprelgGLEELFQAYGIRYHTAAKIAELGFTVNTLLDMKDEELD 95 
                 9******************9***9999888776665443321....222222223366777************************************** PP

     FLO_LFY  88 dlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeek 185
                 ++m+sl ++fr++llvGeryGikaavraerrrl+e++   +rr++ls+d++t a+dalsqeglseepvq+ keaagsgg+g   +e++ ++        
  GAY52453.1  96 EMMNSLGHLFRWELLVGERYGIKAAVRAERRRLDEDD--LRRRHFLSSDTTTnAVDALSQEGLSEEPVQQDKEAAGSGGGG--PWEVAEKK-------- 182
                 ***********************************87..78888898887766************************9999..78776544........ PP

     FLO_LFY 186 kkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnq 284
                 kk++ +k  r      ++  d + e+e+d+de g+g +g+erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnq
  GAY52453.1 183 KKQRGRKGPRP-----RKVVDVNLEDENDDDEYGGGCGGMERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQ 276
                 23311111111.....2345777888899999******************************************************************* PP

     FLO_LFY 285 vfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlers 383
                 vfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdida+fnahprL iWYvPt+LrqLCh+er+
  GAY52453.1 277 VFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLGIWYVPTRLRQLCHAERN 375
                 **************************************************************************************************8 PP

     FLO_LFY 384 ka 385
                  a
  GAY52453.1 376 GA 377
                 65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    
MDPEAFTASL FKWDPRVVVA PPPARVQLEQ VSQPPAVPLG AAAAAAYSAL VRPRELGGLE  60
ELFQAYGIRY HTAAKIAELG FTVNTLLDMK DEELDEMMNS LGHLFRWELL VGERYGIKAA  120
VRAERRRLDE DDLRRRHFLS SDTTTNAVDA LSQEGLSEEP VQQDKEAAGS GGGGPWEVAE  180
KKKKQRGRKG PRPRKVVDVN LEDENDDDEY GGGCGGMERQ REHPFIVTEP GEVARGKKNG  240
LDYLFHLYEQ CRDFLIQVQN IAKERGEKCP TKVTNQVFRY AKKAGASYIN KPKMRHYVHC  300
YALHCLDEEA SNALRRAFKE RGENVGAWRQ ACYKPLVAIA ARQGWDIDAI FNAHPRLGIW  360
YVPTRLRQLC HAERNGAGAA ASSSVSAGAE HSVILKPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-149LFY family protein