PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY52553.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 268aa MW: 30013.1 Da PI: 6.8399

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY52553.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +k++G ++W++ ++ g+ R++k+c++rw +yl GAY52553.1 14 KGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.8	3.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e +++++ +lG++ W++Ia +++ gRt++++k+ w+++l GAY52553.1 67 RGNFSKEEEETIINLHDMLGNR-WSAIAGRLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MGRAPCCEKM GLKKGPWTPE EDRILIVHIK KHGHPNWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF SKEEEETIIN LHDMLGNRWS AIAGRLPGRT DNEIKNVWHT HLKKKAAAVL 120 KQNQKANTNN NNSNSDDHKQ NSKATTAHDH QSAESAMSPQ ASSSSDELSS VTTGETNNNN 180 NNNSDQYCMD KHVKSDHEQN VDSFESFPVI DESFWTDTSL SENSSNLTSD FGGGLNEFAM 240 GHHDYGGGMD FWYNILVTSG ADSLTLPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	8e-74	MYB family protein