PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY52704.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 351aa MW: 38962.3 Da PI: 5.4719

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY52704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl GAY52704.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	46.8	6.9e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia+++ Rt++++k++w+++l GAY52704.1 67 RGNFTDQEEKMIIHLQALLGNR-WAAIASYLR-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKMIIH LQALLGNRWA AIASYLRQRT DNDIKNYWNT HLKKKVKKLQ 120 LAAAGCSEDN SQYRDELASA SSQQISRGQW ERRLQTDIHM AKQALCAALS PDKASILSEL 180 KPANGFISYT KPAVQAPTYA SSTENIAKLL KGWTRNAQKS ASSNSGVTDQ NSINNNVNHI 240 AGAESASSEE TPSKVASNST GIELSEAFES LFGFESFDSS NSTDLSQSVT PESSAFQDYE 300 SKQLLLDPSA GADDDQMPQL SLLEKWLFDD QGGKDYLNDL KLDDHEDTDM F

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKMIIH LQALLGNRWA AIASYLRQRT DNDIKNYWNT HLKKKVKKLQ  120
LAAAGCSEDN SQYRDELASA SSQQISRGQW ERRLQTDIHM AKQALCAALS PDKASILSEL  180
KPANGFISYT KPAVQAPTYA SSTENIAKLL KGWTRNAQKS ASSNSGVTDQ NSINNNVNHI  240
AGAESASSEE TPSKVASNST GIELSEAFES LFGFESFDSS NSTDLSQSVT PESSAFQDYE  300
SKQLLLDPSA GADDDQMPQL SLLEKWLFDD QGGKDYLNDL KLDDHEDTDM F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	1e-108	MYB family protein