PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY52832.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 426aa MW: 46632.3 Da PI: 9.3542

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY52832.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100	4.3e-31	87	244	2	119
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssasecea 75 g+kdrhsk++T +g+RdRRvRls+++a++++ Lqd+LG+ ++sk ++WLl++ak +i+el+ + + GAY52832.1 87 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYGLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLpalippenfglnnhhqeitlssngnE--------- 176 689*************************************************************87666666665555544444322220......... PP TCP 76 esssssasnsssg....................................kaaksaakskksqksaasalnlakesrakar 119 + + ++a ++k + +a++ n kes ++ r GAY52832.1 177 ------------AaggagssqisskqgsfsiknwesadprsdnawsseeAFWRAADYKSKLATANANKENWTKESDHQYR 244 ............12222222222222223343444444444444444432222222223333333334444444444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MHQIVSFLIR GKNKIVGKYL QKLGDCMCTK NNEIRSHEMI TSSKEAVCSS KQEGNTGEGK 60 IIITKASSSS AWLRLKDPRI VRVSRAFGGK DRHSKVCTIR GLRDRRVRLS VPTAIQLYGL 120 QDRLGLNQPS KVVDWLLNAA KDEIDELPPL PALIPPENFG LNNHHQEITL SSNGNEAAGG 180 AGSSQISSKQ GSFSIKNWES ADPRSDNAWS SEEAFWRAAD YKSKLATANA NKENWTKESD 240 HQYREKVQEP SSSINFLPRR PCATSTNSSL PPLSNNLFNN ANALPFGPYY HLEPSNIPFS 300 HHQYLASHGL NITSQTEDLH NFNVVQLPSP LSLSSAAAAG SQILVCPPLP PGAGAGATQP 360 LVFPSQINHF QMLSPTNSSH GATANSHFQA TPHTIRPFHL GMTSRFLPSH GGTDSQSDKD 420 KEFPSK

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MHQIVSFLIR GKNKIVGKYL QKLGDCMCTK NNEIRSHEMI TSSKEAVCSS KQEGNTGEGK  60
IIITKASSSS AWLRLKDPRI VRVSRAFGGK DRHSKVCTIR GLRDRRVRLS VPTAIQLYGL  120
QDRLGLNQPS KVVDWLLNAA KDEIDELPPL PALIPPENFG LNNHHQEITL SSNGNEAAGG  180
AGSSQISSKQ GSFSIKNWES ADPRSDNAWS SEEAFWRAAD YKSKLATANA NKENWTKESD  240
HQYREKVQEP SSSINFLPRR PCATSTNSSL PPLSNNLFNN ANALPFGPYY HLEPSNIPFS  300
HHQYLASHGL NITSQTEDLH NFNVVQLPSP LSLSSAAAAG SQILVCPPLP PGAGAGATQP  360
LVFPSQINHF QMLSPTNSSH GATANSHFQA TPHTIRPFHL GMTSRFLPSH GGTDSQSDKD  420
KEFPSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	1e-38	TCP family protein