PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY53036.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 459aa MW: 49924.7 Da PI: 7.3814

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY53036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.6e-06	349	387	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L GAY53036.1 349 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 387 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MADEFNTSTN WWESSRNRFD SGSSSSATSG LNSNTSSFGW PVTTHHHHHH HHQMIDIKPN 60 TAATTRSSID SSASVSGSSV VFQDSHKLQQ PPAVDSDLQM MGLGLSSPSS LDWNQALLVT 120 RGDKSEGSFR SMLQENMNST SGYRGFSLDH QQQIQFSPHH GGSSSDSTVT CQGLPSSFQM 180 DSSSPVNLYG NVPIFQGGGI LGSDNNQNYH YGAAAAASSS YGMNTSELSP SWSAAATNNN 240 NKVPQFLRTS PPKQQQQQQQ QQQLHFSNNA PFWNASAPTS LNDVRSPNFF PSLQTPYATQ 300 TFDEKPKHHV SEVRDNSSSI AVKKSSGGEP ASKRAKNDQP ASPLPAFKVR KEKMGDRITA 360 LQQLVSPFGK TDTASVLSEA IEYIKFLHDQ VAVLSTPYMK SGGAPIPHQP NSEKVKDSEG 420 PKQDLRSRGL CLVPVSSTFP VTHETTVDFW TPTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MADEFNTSTN WWESSRNRFD SGSSSSATSG LNSNTSSFGW PVTTHHHHHH HHQMIDIKPN  60
TAATTRSSID SSASVSGSSV VFQDSHKLQQ PPAVDSDLQM MGLGLSSPSS LDWNQALLVT  120
RGDKSEGSFR SMLQENMNST SGYRGFSLDH QQQIQFSPHH GGSSSDSTVT CQGLPSSFQM  180
DSSSPVNLYG NVPIFQGGGI LGSDNNQNYH YGAAAAASSS YGMNTSELSP SWSAAATNNN  240
NKVPQFLRTS PPKQQQQQQQ QQQLHFSNNA PFWNASAPTS LNDVRSPNFF PSLQTPYATQ  300
TFDEKPKHHV SEVRDNSSSI AVKKSSGGEP ASKRAKNDQP ASPLPAFKVR KEKMGDRITA  360
LQQLVSPFGK TDTASVLSEA IEYIKFLHDQ VAVLSTPYMK SGGAPIPHQP NSEKVKDSEG  420
PKQDLRSRGL CLVPVSSTFP VTHETTVDFW TPTFGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-79	bHLH family protein