PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY53398.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 324aa MW: 37010.7 Da PI: 6.444

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY53398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.4e-17	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll++++ ++ g+W++ a++ g++Rt+k+c++rw++yl GAY53398.1 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL 70 89********************************************97 PP
2	Myb_DNA-binding	48.7	1.7e-15	76	119	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E+ +++++ ++G++ W++Ia++++ gRt++++k++w++ GAY53398.1 76 RGNLTPQEQMSILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MSSFSKSSTS SIYGENDSDQ LRRGPWTLEE DTLLIQYISR HSEGRWNLLA KRSGLKRTGK 60 SCRLRWLNYL KPDVKRGNLT PQEQMSILEL HSKWGNRWSK IAQHLPGRTD NEIKNYWRTR 120 VQKQARHLKI DANSTTFQEI IRCFWMPRLL QKMDTSSSSS PSALSQNPTI NSQPFDHAFH 180 HQGSASAQII SHQVPYDRGV IDHQELNSSS DSEHGIGTST SCISSSESMN FSQVSQFSEY 240 PTGGDHFHAS NNDSSEYNTF AKDFCQFDSN CYDMENISQP ETMPAPLAGD FNNWVQEYDL 300 VDNMWGAWMN FGNSGTHADI NEFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25340.1	9e-76	MYB family protein