PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY53424.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CO-like

Protein Properties

Length: 403aa MW: 44490.1 Da PI: 6.0593

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY53424.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.8	9e-08	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k+++++C ++ +lC+ C + H+ H++v GAY53424.1 17 ARACDGCLLKRARWYCVADDAFLCQGCDASVHSAnqlasrHERV 60 578*****************************667888888876 PP
2	CCT	68.3	2.1e-23	347	390	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ GAY53424.1 347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 390 9*****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MMTGEKRTAN AMGGKTARAC DGCLLKRARW YCVADDAFLC QGCDASVHSA NQLASRHERV 60 RLETASSCNN NNKLINEHTD KDTVPVWHQG FTRKARTPRH NNNKAMLVQQ AKANEPLVPE 120 IGCEDGSLQA DDQVIDEQLL YQVPVFDPFE AVEPDENLIV DGYNGQDGTG DLDDLHGFLP 180 SDLDLAEFAA DVESLLGGGG GALDEDSCDV KEFGTLLDCK EEETIALNLK IKAEEVEEAV 240 IPAATREAID CNFDYQSPVT GDDTAGLMST ECKPKLMRNV CLKLNYDAVI TAWASQGCPW 300 TAGSRPEINL NHCWPHCTGL CCKDVHHHTC GGGAVLRGCH LGAGGGREAR VSRYREKRRT 360 RLFSKKIRYE VRKLNAEKRP RMKGRFVKRT SFMGSANDAL QYH

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MMTGEKRTAN AMGGKTARAC DGCLLKRARW YCVADDAFLC QGCDASVHSA NQLASRHERV  60
RLETASSCNN NNKLINEHTD KDTVPVWHQG FTRKARTPRH NNNKAMLVQQ AKANEPLVPE  120
IGCEDGSLQA DDQVIDEQLL YQVPVFDPFE AVEPDENLIV DGYNGQDGTG DLDDLHGFLP  180
SDLDLAEFAA DVESLLGGGG GALDEDSCDV KEFGTLLDCK EEETIALNLK IKAEEVEEAV  240
IPAATREAID CNFDYQSPVT GDDTAGLMST ECKPKLMRNV CLKLNYDAVI TAWASQGCPW  300
TAGSRPEINL NHCWPHCTGL CCKDVHHHTC GGGAVLRGCH LGAGGGREAR VSRYREKRRT  360
RLFSKKIRYE VRKLNAEKRP RMKGRFVKRT SFMGSANDAL QYH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	358	374	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	5e-90	CO-like family protein