PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY53592.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HSF

Protein Properties

Length: 501aa MW: 56653.4 Da PI: 7.0785

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY53592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	95.6	5.1e-30	20	155	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHH.TTEEE---SSBTTTT....................... CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnm.YgFkkvkdeekksks....................... 74 Fl k+y++++d++++e++sws+n+nsfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+ Y+F k+ e + s GAY53592.1 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTyYEFVKICLELLRLGSsmmkmgcsrfhliqlyllivdhl 116 9*******************************************************83699998887665557899************99999 PP ............XTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 ............kekiweFkhksFkkgkkellekikrkk 101 +++ weF+++ F k+k++ll++i+r+k GAY53592.1 117 gnpgssmgfrkiDPEKWEFSNDDFVKDKRHLLKNIHRRK 155 99988877765449*********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
METSAASGGP GGVGGGPAPF LIKTYDMVDD SSTDEIVSWS DNKNSFVVWN PPEFARLLLP 60 TFFKHNNFSS FIRQLNTYYE FVKICLELLR LGSSMMKMGC SRFHLIQLYL LIVDHLGNPG 120 SSMGFRKIDP EKWEFSNDDF VKDKRHLLKN IHRRKPIHSH SHPQTQGSSV DPERATFEEQ 180 MERLSHEKSA LEANIVRLKQ QRSTAKIQLE DLAQRIDSME QRQENLLTFL QKAVQNPTFV 240 DRLARKIESM DISAYNKKRR KPQVDQSKPI VESSLLDNNS CSTSRPESGN IFHQDFSNKL 300 RLELSPAVSD INLVSHSTQS STEDRGSPQK KISEVEPKVA HTRTEGNLYV PETFELSDTG 360 TSFTFKMDST FSRKVPANDS SRVYSLQRRS TSNEEVDGHV SCHLNLTLAS SPLQINRGLH 420 SSRMPQPISP QEAPNNNPAP AAAPVRVNDV FWEQFLTERP GSSDNEEASS SYRANPYEEQ 480 EDKRSGLGMS RNAKNMEQLT L

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

METSAASGGP GGVGGGPAPF LIKTYDMVDD SSTDEIVSWS DNKNSFVVWN PPEFARLLLP  60
TFFKHNNFSS FIRQLNTYYE FVKICLELLR LGSSMMKMGC SRFHLIQLYL LIVDHLGNPG  120
SSMGFRKIDP EKWEFSNDDF VKDKRHLLKN IHRRKPIHSH SHPQTQGSSV DPERATFEEQ  180
MERLSHEKSA LEANIVRLKQ QRSTAKIQLE DLAQRIDSME QRQENLLTFL QKAVQNPTFV  240
DRLARKIESM DISAYNKKRR KPQVDQSKPI VESSLLDNNS CSTSRPESGN IFHQDFSNKL  300
RLELSPAVSD INLVSHSTQS STEDRGSPQK KISEVEPKVA HTRTEGNLYV PETFELSDTG  360
TSFTFKMDST FSRKVPANDS SRVYSLQRRS TSNEEVDGHV SCHLNLTLAS SPLQINRGLH  420
SSRMPQPISP QEAPNNNPAP AAAPVRVNDV FWEQFLTERP GSSDNEEASS SYRANPYEEQ  480
EDKRSGLGMS RNAKNMEQLT L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	261	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-174	HSF family protein