PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY54680.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 214aa MW: 24178.3 Da PI: 8.683

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY54680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2.1e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl GAY54680.1 13 KGAWSKQEDQKLIDYIRKHGEGCWRTLPQAAGLARCGKSCRLRWINYL 60 79********************************************97 PP
2	Myb_DNA-binding	51.7	2e-16	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l GAY54680.1 66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTANEVKNYWNSHL 111 8999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MRKPCCDKQD TNKGAWSKQE DQKLIDYIRK HGEGCWRTLP QAAGLARCGK SCRLRWINYL 60 RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTA NEVKNYWNSH LRRKLINMGI 120 DPKNHRLHHS LPHNSTGATS LGQQLVDMNE PAVKPRGDDI YQASDAGSCW EDEPCRLLPD 180 LNLDLTMSIP SSSSSPSLAN KANTEKKNDS ELPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	4e-75	MYB family protein