PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY54852.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 549aa    MW: 61456.7 Da    PI: 5.8832
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY54852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.11.8e-1381795491374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+elL +cA+a++++d+ +a++l+a+ ++++s +gdp+qRl ay++e+L arla+s+s++ykal+++e +   s+e l++++l++e++P++kf+++ aN
  GAY54852.1 179 LKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSIYKALRCKEPA---SAELLSYMHLLYEICPYFKFGYMSAN 274
                 5799*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea++ e+++HiiDf i qG QW+ L+ aLasRp+gpp++RiTg++++++   +   le +g+rL+k+A+  +vpfefn+ +a + ++++le+L+v
  GAY54852.1 275 GAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAyaRGGGLEIVGQRLSKLADLYKVPFEFNA-AAISGSEVQLENLEV 372
                 **************************************************888899999************************.8999*********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn++++lh+++desvs++++rd++L+lvk+lsPkvv++veqea++n+++F++rfle++++y a+fds+++ lpr+s++ri+vE+++l+reiv
  GAY54852.1 373 RPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIV 471
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++acegaer+erhe ++kWr+r+ +aGF+p+pls ++++++k+ll++++ d y++ee++g+l+lgWk++++++ SaWr
  GAY54852.1 472 NLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYN-DNYTLEERDGALFLGWKNQAIIVSSAWR 549
                 **************************************************.55*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    
MKMMMRFSRM HKMSDGTQKF YDQPVQKLAS KNWPPHQNID HQPSSDDSNE RARLSVDTFE  60
QYCTLESSSG TGSHGAPNSP STASFSPEKT QVSWPNQQSY SSELYQSPDR TCGSPVSGSC  120
ITQNENDLRH KLRELETVML GPDLDTPAMY NVTSPKEDQI SSESERWKCL VEIISRGDLK  180
ELLCACAKAI ENNDMYAAES LMAESRQMVS VSGDPIQRLG AYMLEGLIAR LASSGSSIYK  240
ALRCKEPASA ELLSYMHLLY EICPYFKFGY MSANGAIAEA MKDENKIHII DFLIAQGSQW  300
IILIMALASR PGGPPHIRIT GIDDSTAAYA RGGGLEIVGQ RLSKLADLYK VPFEFNAAAI  360
SGSEVQLENL EVRPGEALAV NFSMMLHHMP DESVSIQNHR DRLLRLVKGL SPKVVTLVEQ  420
EANTNTAPFF HRFLETMNHY GAIFDSIDVA LPRDSKDRIN VEQHCLAREI VNLIACEGAE  480
RVERHEPFGK WRSRFIMAGF TPYPLSPFVN ATIKTLLENY NDNYTLEERD GALFLGWKNQ  540
AIIVSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0GRAS family protein