PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY55013.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 289aa    MW: 32262.3 Da    PI: 5.9944
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY55013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.51.1e-101462349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49
                 + k +r v+fskRr+g+l KA E +  +  + a+++ s+  + ++y++
  GAY55013.1 14 RDTKEQRAVSFSKRRHGLLNKAAEYCLRTRSQLALLVSSPvsDTTFYTF 62
                567899********************************96336778887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MVAVGKRRIP LKRRDTKEQR AVSFSKRRHG LLNKAAEYCL RTRSQLALLV SSPVSDTTFY  60
TFGHSSVDAV LDAFVNNRAP EAAEKELVRL GISMFNEVKD LELYDKKISK AIKSDGNLER  120
EGFWEDYEKL GNSDESIGEL GVIVDKLAKA KEKAILRLTD LLASPQVSNS GSCSASASNV  180
GCASDEQFKF GNNYACGERF KFGNNHIHED DNKKEFIKFG TGYVEKEVMT GLELEEYCDA  240
KQGYFGNFLT LGADANIAHQ NCLVYQPDPI AIANEFGQHL PYDVNFFNI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.12e-17M-type_MADS family protein