PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55178.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 418aa MW: 45150.2 Da PI: 7.7785

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.4	1.6e-10	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f++rtG C yG++C+F+H+ GAY55178.1 48 PGEPDCLFYRRTGLCGYGSNCRFNHP 73 5789*********************8 PP
2	zf-CCCH	37.4	4.2e-12	91	116	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++++tGtCkyG++Ck++H++ GAY55178.1 91 GQPDCGYYLKTGTCKYGSTCKYHHPK 116 5799********************96 PP
3	zf-CCCH	38.4	2e-12	138	161	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ GAY55178.1 138 KSCPYYMRTGSCKFGVACKFHHPQ 161 66********************97 PP
4	zf-CCCH	41.9	1.6e-13	252	277	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ Cr+++ tGtCkyG+ CkF+H++ GAY55178.1 252 DQPDCRYYMNTGTCKYGADCKFHHPK 277 6899********************96 PP
5	zf-CCCH	34.7	3e-11	297	322	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+Ck+G++C+F H+ GAY55178.1 297 PGQAICSNYSMYGICKFGPTCRFDHP 322 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MPDNRQVKSN AVANQSADNI EEAIWRLKIH DNQEGGGVAQ ASPYPARPGE PDCLFYRRTG 60 LCGYGSNCRF NHPAYAAQGA QYREELPERN GQPDCGYYLK TGTCKYGSTC KYHHPKDRNG 120 AGPVSFNILG LPMRQDEKSC PYYMRTGSCK FGVACKFHHP QPSSLGTALP LTGNASLGSM 180 GSSVLPSSGL QYAGIVPAPG WNTYMGNIGP LSPTSIAGSN LIYSSRNQGD LGAGAQMHIL 240 SASSQNLPER PDQPDCRYYM NTGTCKYGAD CKFHHPKERI AQSAASNIGP LGLPSRPGQA 300 ICSNYSMYGI CKFGPTCRFD HPYAGYPINY GLSLPPLSIL DSSLMNHQAI SATHSIETSP 360 DASSKIPNWV QNSDAVSVQH QNPDMKNSTT KNSDDSSKVD HPPHSVPNCS EPPHDQSN

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MPDNRQVKSN AVANQSADNI EEAIWRLKIH DNQEGGGVAQ ASPYPARPGE PDCLFYRRTG  60
LCGYGSNCRF NHPAYAAQGA QYREELPERN GQPDCGYYLK TGTCKYGSTC KYHHPKDRNG  120
AGPVSFNILG LPMRQDEKSC PYYMRTGSCK FGVACKFHHP QPSSLGTALP LTGNASLGSM  180
GSSVLPSSGL QYAGIVPAPG WNTYMGNIGP LSPTSIAGSN LIYSSRNQGD LGAGAQMHIL  240
SASSQNLPER PDQPDCRYYM NTGTCKYGAD CKFHHPKERI AQSAASNIGP LGLPSRPGQA  300
ICSNYSMYGI CKFGPTCRFD HPYAGYPINY GLSLPPLSIL DSSLMNHQAI SATHSIETSP  360
DASSKIPNWV QNSDAVSVQH QNPDMKNSTT KNSDDSSKVD HPPHSVPNCS EPPHDQSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-118	C3H family protein