PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55179.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 451aa MW: 48782.4 Da PI: 8.0264

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.3	1.7e-10	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f++rtG C yG++C+F+H+ GAY55179.1 48 PGEPDCLFYRRTGLCGYGSNCRFNHP 73 5789*********************8 PP
2	zf-CCCH	37.3	4.6e-12	91	116	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++++tGtCkyG++Ck++H++ GAY55179.1 91 GQPDCGYYLKTGTCKYGSTCKYHHPK 116 5799********************96 PP
3	zf-CCCH	38.3	2.2e-12	138	161	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ GAY55179.1 138 KSCPYYMRTGSCKFGVACKFHHPQ 161 66********************97 PP
4	zf-CCCH	41.8	1.8e-13	285	310	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ Cr+++ tGtCkyG+ CkF+H++ GAY55179.1 285 DQPDCRYYMNTGTCKYGADCKFHHPK 310 6899********************96 PP
5	zf-CCCH	34.6	3.3e-11	330	355	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+Ck+G++C+F H+ GAY55179.1 330 PGQAICSNYSMYGICKFGPTCRFDHP 355 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MPDNRQVKSN AVANQSADNI EEAIWRLKIH DNQEGGGVAQ ASPYPARPGE PDCLFYRRTG 60 LCGYGSNCRF NHPAYAAQGA QYREELPERN GQPDCGYYLK TGTCKYGSTC KYHHPKDRNG 120 AGPVSFNILG LPMRQDEKSC PYYMRTGSCK FGVACKFHHP QPSSLGTALP LTGNASLGSM 180 GSSVLPSSGL QYAGSLPTWS LQRAPYLSSR LQGTQSYMPL IVSPSQGIVP APGWNTYMGN 240 IGPLSPTSIA GSNLIYSSRN QGDLGAGAQM HILSASSQNL PERPDQPDCR YYMNTGTCKY 300 GADCKFHHPK ERIAQSAASN IGPLGLPSRP GQAICSNYSM YGICKFGPTC RFDHPYAGYP 360 INYGLSLPPL SILDSSLMNH QAISATHSIE TSPDASSKIP NWVQNSDAVS VQHQNPDMKN 420 STTKNSDDSS KVDHPPHSVP NCSEPPHDQS N

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MPDNRQVKSN AVANQSADNI EEAIWRLKIH DNQEGGGVAQ ASPYPARPGE PDCLFYRRTG  60
LCGYGSNCRF NHPAYAAQGA QYREELPERN GQPDCGYYLK TGTCKYGSTC KYHHPKDRNG  120
AGPVSFNILG LPMRQDEKSC PYYMRTGSCK FGVACKFHHP QPSSLGTALP LTGNASLGSM  180
GSSVLPSSGL QYAGSLPTWS LQRAPYLSSR LQGTQSYMPL IVSPSQGIVP APGWNTYMGN  240
IGPLSPTSIA GSNLIYSSRN QGDLGAGAQM HILSASSQNL PERPDQPDCR YYMNTGTCKY  300
GADCKFHHPK ERIAQSAASN IGPLGLPSRP GQAICSNYSM YGICKFGPTC RFDHPYAGYP  360
INYGLSLPPL SILDSSLMNH QAISATHSIE TSPDASSKIP NWVQNSDAVS VQHQNPDMKN  420
STTKNSDDSS KVDHPPHSVP NCSEPPHDQS N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-129	C3H family protein