PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55285.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 342aa MW: 38310.6 Da PI: 7.9281

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+d++k++G g+W++ +++ + R++k+c++rw +yl GAY55285.1 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.8	1.9e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++ GAY55285.1 67 RGKFSLHEEQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MGRSPCSDRN GLKRGPWTPE EDQKLLDYIK KHGHGSWRSL PEKADLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLHEEQTIIQ LHALLGNRWS AIAAHLPKRT DNEIKNYWNT HIKKRLARMG 120 IDPMTHRPKV PCLGSADGDP KNASNLSHMA QWENARLEAE ARLVKESKAK QNDQQKSEGP 180 VSASANKQLN RMATTYTSTR PRCLDILKAW ESTICNINGS IISFGDGSDL ESPPSILQFS 240 EDRQQAAAMS SLENMNKNLD FVYDAGGSAG DAWNIVGSSS VNNAGDENFI EGFSCDHHMN 300 NNNNNNNIGG DQESSNNYCW NELISVVECR QPNTTPFYTS GC

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MGRSPCSDRN GLKRGPWTPE EDQKLLDYIK KHGHGSWRSL PEKADLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLHEEQTIIQ LHALLGNRWS AIAAHLPKRT DNEIKNYWNT HIKKRLARMG  120
IDPMTHRPKV PCLGSADGDP KNASNLSHMA QWENARLEAE ARLVKESKAK QNDQQKSEGP  180
VSASANKQLN RMATTYTSTR PRCLDILKAW ESTICNINGS IISFGDGSDL ESPPSILQFS  240
EDRQQAAAMS SLENMNKNLD FVYDAGGSAG DAWNIVGSSS VNNAGDENFI EGFSCDHHMN  300
NNNNNNNIGG DQESSNNYCW NELISVVECR QPNTTPFYTS GC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	8e-99	MYB family protein