PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY55426.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 367aa    MW: 42922.5 Da    PI: 8.5328
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY55426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06149165622
                 -SGGGGTS--TTTTT-S CS
     zf-CCCH   6 CrffartGtCkyGdrCk 22 
                 C+f+++tG C++G rC+
  GAY55426.1 149 CPFHLKTGACRFGQRCS 165
                 ****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MEDNECRDGG KKCSHVSNRY HPSPHLDTYP PIRRWGRREL ATYPPLAHQL RRVLRASRIW  60
RRKENECDED DDWEYVEEGP TEIIWQGNEI IIRMKKVRVL KKDANPLSKK EDVDRPTSNP  120
LPPQSEAFAD HQNAQQELET VAQQDKVHCP FHLKTGACRF GQRCSRVYFY PDKSCTLLIK  180
NMHNGPGLAW EQDEGLEVCR NGFSHLRGNI YVHYKSLESA VLAYHSINGR YFAGKQTCSR  240
GMARNFIHCF RNPGGDYEWA DLDKPPPRYW VKKMAALFGY SDESGTWNQE RSGQTRNKID  300
STNADRHHYR RSRLREADRV KSGSGRSHDD ERQVHETTWS RRRSNYHSES RSDEANSDGS  360
WSDRDRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-108C3H family protein